Welcome!
ALERT 
The Sequencing and ncRNA Program (ncRNA core), led by Chang-Gong Liu, Ph.D., is a shared resource established in 2009 to support ncRNA cancer research efforts at MD Anderson Cancer Center and Institutions under the UT system. The core has been well equipped with updated, emerging and cutting-edge technologies and platforms, such as next generation sequencing and microarray, to explore genetic changes of both RNA and DNA levels. The NGS services provided in this core are whole genome resequencing, targeted genome (exome, CHIPseq, amplicons) sequencing, whole transcriptome RNA sequencing, targeted RNA sequencing and small RNA sequencing by using highly accurate NGS sequencers of Illumina NextSeq series, Ion Torrent PGM and Ion Proton. The microarray-based services also are provided for RNA expression profiling and DNA genotyping. In addition, the core has recently acquired HTG Edge system to work directly on the most difficult samples of FFPE, plasma/serum and PAXgene for miRNome and targeted RNA sequencing.
Director
Chang-gong Liu, Ph.D.
Professor, Department of Experimental Therapeutics
Phone: 713-792-2287 (office)
Lab: 713-745-8182
E-mail: cgliu@mdanderson.org
Director of Operations
Xiuping Liu, M.D.
Associate Professor, Department of Experimental Therapeutics
Phone: 713-792-2292 (office)
Lab: 713-745-8182
E-mail: xliu3@mdanderson.org
Research Scientist
Ping Xiong
Department of Experimental Therapeutics
Phone: 713-745-8182
E-mail: pxiong@mdanderson.org
Interested in working with the Sequencing and ncRNA Program?
Current iLab users login by clicking the green "Login" button in the top right corner .
New users must first register HERE or by hitting the blue "Sign-Up" button in the top right corner.
| Hours | Location |
|
Monday-Friday, 8 AM - 5 PM |
4SCR3.2080, South Campus Research Building 4 |
| Name | Role | Phone | Location | |
|---|---|---|---|---|
| Chang-gong Liu, Ph.D. |
Director
|
713-792-2287
|
cgliu@mdanderson.org
|
4SCR3.1037
|
| Xiuping Liu, M.D. |
Operations Director
|
713-792-2292
|
xliu3@mdanderson.org
|
4SCR3.1017
|
| Service list |
| ► 10X Genomics (2) | |||
| Name | Description | Price | |
|---|---|---|---|
| 10X Genomics Capture and library, 1st sample | Inquire | ||
| 10X Genomics Capture and library, 2-8 sample (per sample) | Inquire | ||
| ► 5500XL SOLiD™Sequencing***, 99,99% Accuracy (7) | |||
| Name | Description | Price | |
| CHIPSeq, 50NTs Frag Single Read, 30M Reads, 30 Samples/FC, | Inquire | ||
| Exome(45Mb), PE Sequencing, 100X coverage, 12Samples/FC | Inquire | ||
| Exome(45Mb), PE Sequencing, 200X coverage, 6Samples/FC | Inquire | ||
| Small RNA/miRNA Sequencing, 10-15M Reads, 40-48Sample/FC | Inquire | ||
| Whole Genome PE Resequencing, 20-30X Coverage, 2samples required | Inquire | ||
| Whole Transcriptome or mRNA, PE Sequencing, 50M Reads, 24Sample/FC | Inquire | ||
| Whole Transcriptome, PE Sequencing, 100M Reads, 12Sample/FC | Inquire | ||
| ► Affymetrix GeneChip - Chip Only (7) | |||
| Name | Description | Price | |
| GeneChip Human Clariom D array | Inquire | ||
| GeneChip Human Clariom S array | Inquire | ||
| GeneChip Human Genome U133 plus 2.0 | Inquire | ||
| GeneChip Human Mapping SNP 6.0 | Inquire | ||
| GeneChip Human Transcriptome Array (HTA) 2.0 | Inquire | ||
| GeneChip Mouse Genome 430 2.0 | Inquire | ||
| Other (Chip Type) | Inquire | ||
| ► Affymetrix GeneChip - Sample Processing (3) | |||
| Name | Description | Price | |
| mRNA Xpression analysis from total RNA (3' IVT Plus ) | Inquire | ||
| RNA ST Xpression analysis from total RNA (WT Plus Assay) | Inquire | ||
| SNP Analysis from Genomic DNA (SNP 6.0 Genotyping) | Inquire | ||
| ► Bioanalyzer and Nanodrop (7) | |||
| Name | Description | Price | |
| DNA 12000 assay | Inquire | ||
| DNA High Sensitive Assay (1-10 samples) | Inquire | ||
| DNA1000 Assay (1-12 samples) | Inquire | ||
| NanoDrop per sample | Inquire | ||
| RNA6000 Nano Assay (1-12 samples) | Inquire | ||
| RNA6000 Pico Assay (1-11 samples) | Inquire | ||
| Small RNA Assay (1-12 samples) | Inquire | ||
| ► Expression Analysis (2) | |||
| Name | Description | Price | |
| Data Change Calculation | Inquire | ||
| Pairwise Comparison | Inquire | ||
| ► HTG Edge Array/EdgeSeq (4) | |||
| Name | Description | Price | |
| HTG EdgeSeq Panel /NG Sequencing (>24 samples) - Lymphoma or PATH | Inquire | ||
| HTG EdgeSeq Panel /NG Sequencing (>24 samples) - miRNA or OBP | Inquire | ||
| HTG EdgeSeq Panel /NG Sequencing (>24 samples), Immunol-Oncology | Inquire | ||
| Other | Inquire | ||
| ► Illumina Next Seq 500 Sequencing (16) | |||
| Name | Description | Price | |
| Data Analysis: Contact Dr. Jianhua Zhang (713)-792-6807 for Data Analysis | Inquire | ||
| Illumina TrueSeq CHIP library | Inquire | ||
| Illumina TrueSeq RNA Access Library | Inquire | ||
| Illumina TrueSeq small RNAseq Library | Inquire | ||
| Illumina TrueSeq stranded mRNAseq Library | Inquire | ||
| Illumina TrueSeq stranded Whole Transcriptome RNAseq Library | Inquire | ||
| Illumina TruSeq Exome | Inquire | ||
| Nextera DNA Library | Inquire | ||
| Other (Library Construction) | Inquire | ||
| Other (Sequencing) | Inquire | ||
| Sequencing Illumina High-Output sequencing PE 150 x150 nt | Inquire | ||
| Sequencing Illumina High-Output sequencing PE 75 x75 nt | Inquire | ||
| Sequencing Illumina High-Output sequencing SR 1 x75 nt | Inquire | ||
| Sequencing Illumina Mid-Output sequencing PE 150 x150 nt | Inquire | ||
| Sequencing Illumina Mid-Output sequencing PE 75 x75 nt | Inquire | ||
| Targeted Exome Capture (Quote) | Inquire | ||
| ► Ion Torrent PGM and Ion Proton Sequencing (9) | |||
| Name | Description | Price | |
| DNA Library: Ampliseq Cancer HotSpot V2 (50 Genes)-Sample prep | Inquire | ||
| DNA Library: Ampliseq CCP (400 Genes)-Sample prep | Inquire | ||
| DNA Library: Ampliseq human 50Mb Exome-sample prep | Inquire | ||
| DNA Library: Targeted fragments or PCR Amplicons sample prep | Inquire | ||
| Other (Library Construction) | Inquire | ||
| RNA Library: Whole Transcriptome (mRNA+LncRNA)- sample prep | Inquire | ||
| Sequencing Ion Proton PI Chip (10Gb output data) | Inquire | ||
| Sequencing on Ion PGM 316 Chip (100Mb output data) | Inquire | ||
| Sequencing on Ion PGM 318 Chip (1Gb output data) | Inquire | ||
| ► PacBio (1) | |||
| Name | Description | Price | |
| Blue Pippin size selection | Inquire | ||
| ► Real-Time qRT-PCR (1) | |||
| Name | Description | Price | |
| Real-Time qRT-PCR on ABI 7900HT (96 or 384 format)/run | Inquire | ||
| ► miRNA Xpression Profiling (2) | |||
| Name | Description | Price | |
| GeneChip miRNA 4.0 array | Inquire | ||
| miRNA Xpression Profiling-Sample Process | Inquire | ||
